About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3022427_3022623_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3022427 - 3022623
Intron Length:
197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCCTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGTAAC
U12 Branch Point Sequence:
AATGTTGTAACA
Flanking Amino Acid:
FVLGRSMGFIGHYLDQKRLK
Intron Amino Acid Position:
406

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.8
80.5
34.9
Major BPS
74.5
0.61
1.1
75.6
36.6
Major PPT
90.4
0.91
0.6
89.7
18.7
Minor 5ss
44
-0.7
2.8
55.1
43.4
Minor BPS
48.5
-0.1
2
61.79
38.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016067
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016814
3021584 - 3030826
9243