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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3022701_3022825_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3022701 - 3022825
Intron Length:
125

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGTACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
AATACATTGATT
Flanking Amino Acid:
DVLRNCGSFTREEADEYIDI
Intron Amino Acid Position:
380

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
81
33
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
93.2
0.97
0.6
88.8
20.4
Minor 5ss
36.5
-1.5
2.7
44.7
42.7
Minor BPS
56.6
0.29
1.6
72.49
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016067
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016814
3021584 - 3030826
9243