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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3022909_3023440_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3022909 - 3023440
Intron Length:
532

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAATGT
5'SS Class:
major
3'SS Sequence:
TTATGTCCTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ACATCTTTATTT
Flanking Amino Acid:
LEVEKITTSKKPNLILNVDG
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
0.9
70.9
35.5
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
77
0.61
0.8
74.7
36
Minor 5ss
33.6
-1.9
3.2
47.6
47.9
Minor BPS
59.7
0.38
1.6
70.65
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016067
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016814
3021584 - 3030826
9243