Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3025573_3025830_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3025573 - 3025830

Intron Length:

258

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGG|GTGAGCTAT

5'SS Class:

major

3'SS Sequence:

GCTCTGATTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAA

U12 Branch Point Sequence:

GATTATTTAAAA

Flanking Amino Acid:

TVPMDYSWARELGLIRKPAS

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

37.5

Major BPS

81.6

0.78

0.8

24.9

Major PPT

74.1

0.54

69.6

40.4

Minor 5ss

39.6

-1.2

3.1

47.1

48.3

Minor BPS

59.8

0.31

1.6

68.02

37.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000016067

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000016814

3021584 - 3030826

9243