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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3025925_3026119_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3025925 - 3026119
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTCAC
5'SS Class:
major
3'SS Sequence:
ATTCTCTCCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGTCTCTCAAAA
Flanking Amino Acid:
RSFDELGEVIQSVYQDLVAK
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.59
1.1
66.4
39.5
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
74.2
0.54
0.8
66.7
34.9
Minor 5ss
36.7
-1.5
3
50.3
40.1
Minor BPS
55.3
0.16
1.6
67.4
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016067
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016814
3021584 - 3030826
9243