About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3026894_3027259_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3026894 - 3027259
Intron Length:
366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TTGTTTTGAACC
Flanking Amino Acid:
GVKMIVVLGEIGGTEEYKIC
Intron Amino Acid Position:
54

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
85
0.79
0.7
80.3
25.2
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
67.2
0.52
1.4
74.45
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016067
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016814
3021584 - 3030826
9243