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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3063676_3063824_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3063676 - 3063824
Intron Length:
149

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCAGGTTCC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGGTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTAAC
U12 Branch Point Sequence:
GGGTTGCTAACC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.9
78.8
33.4
Major BPS
69.4
0.48
1.1
69.6
35.5
Major PPT
83.4
0.75
0.9
80.2
37.3
Minor 5ss
29.7
-2.3
4
44.1
43.8
Minor BPS
44.9
-0.4
2.3
56.12
42.1

Associated Gene:

Gene:
CNP
Ensembl Gene ID:
ENSAPLG00000002170
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002215
3063609 - 3067625
4017