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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3064495_3065102_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3064495 - 3065102
Intron Length:
608

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTATGTATA
5'SS Class:
major
3'SS Sequence:
CCTGTGTTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
LKAFKKESKYFAFAIEDPKV
Intron Amino Acid Position:
206

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
74.5
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
78.6
0.64
0.9
72
38
Minor 5ss
48
-0.2
2.5
65.4
40.1
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
CNP
Ensembl Gene ID:
ENSAPLG00000002170
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002215
3063609 - 3067625
4017