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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3065246_3065807_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3065246 - 3065807
Intron Length:
562

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTAAAG
U12 Branch Point Sequence:
CTGTTCTGGACT
Flanking Amino Acid:
PGAEEYAQQEAVKASYGKGF
Intron Amino Acid Position:
254

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
77.7
30.1
Major BPS
46.3
-0.2
1.6
59
44.6
Major PPT
84.3
0.77
0.7
77
31.7
Minor 5ss
33.3
-1.9
2.7
38.5
32.5
Minor BPS
61.2
0.43
1.5
75.01
42.2

Associated Gene:

Gene:
CNP
Ensembl Gene ID:
ENSAPLG00000002170
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002215
3063609 - 3067625
4017