About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3075817_3076185_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3075817 - 3076185
Intron Length:
369

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCATA
5'SS Class:
strong_major
3'SS Sequence:
CACTTCTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
TGGCATTGCACT
Flanking Amino Acid:
EKVYQTEKTKEHKQLLKNAQ
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
1
0.8
87.1
30
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
77.1
0.61
0.8
69.3
36.6
Minor 5ss
43
-0.8
2.9
57.2
47.1
Minor BPS
43
-0.4
2
60.09
43

Associated Gene:

Gene:
DNAJC7
Ensembl Gene ID:
ENSAPLG00000002392
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018062
3071244 - 3093381
22138
ENSAPLT00000002485
3073475 - 3093381
19907