About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3093838_3094394_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3093838 - 3094394
Intron Length:
557

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTGAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTTGTTGAACA
Flanking Amino Acid:
EIDKSKDKKEVTIVVLGNKC
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
76.2
0.59
1
73.3
40.9
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
64.5
0.45
1.9
80.01
36.1

Associated Gene:

Gene:
NKIRAS2
Ensembl Gene ID:
ENSAPLG00000002856
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002893
3093295 - 3094634
1340