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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3105513_3144987_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3105513 - 3144987
Intron Length:
39475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTGGGATGT
5'SS Class:
weak_major
3'SS Sequence:
CGGTGCCACCCAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGAGCAC
U12 Branch Point Sequence:
CCGGTGCCACCC
Flanking Amino Acid:
LLPWVWSGRPPPCASFPFQM
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.3
0.03
1.3
50.7
42.9
Major BPS
45.3
-0.2
1.4
51.4
43.9
Major PPT
57.4
0.17
1
47
40.7
Minor 5ss
34.7
-1.7
3.5
50.9
46
Minor BPS
28.3
-1.6
2.1
29.4
36.6

Associated Gene:

Gene:
ZNF385C
Ensembl Gene ID:
ENSAPLG00000002883
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002915
3098293 - 3145305
47013