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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3204641_3205047_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3204641 - 3205047
Intron Length:
407

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACAGTT
5'SS Class:
major
3'SS Sequence:
TGCTTCTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
AGCCTACTAATG
Flanking Amino Acid:
MNVNEIFMAIAKKLPKNEPQ
Intron Amino Acid Position:
179

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.7
1.1
78.9
35.3
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
80.6
0.69
0.8
73.3
37.2
Minor 5ss
41.9
-0.9
3.5
64.8
46.5
Minor BPS
41.5
-0.7
1.8
41.65
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027551
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046198
3204525 - 3207606
3082