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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3206416_3207440_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3206416 - 3207440
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACACAA
U12 Branch Point Sequence:
GCAAACACAACC
Flanking Amino Acid:
FHEYQESTIGAAFLTQTVCL
Intron Amino Acid Position:
56

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.4
29.1
Major BPS
51.9
0.05
0.9
59
27.3
Major PPT
86.6
0.82
0.7
84.2
23.8
Minor 5ss
28.5
-2.5
3
35.5
41.2
Minor BPS
41.7
-0.6
1.9
47.78
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027551
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046198
3204525 - 3207606
3082