Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3220546_3221087_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3220546 - 3221087

Intron Length:

542

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGGGGCCG

5'SS Class:

major

3'SS Sequence:

CGTTACCTGGCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CGCTGAT

U12 Branch Point Sequence:

CAGCCGTTACCT

Flanking Amino Acid:

MEVPNAKLQRAACLLLL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.4

0.53

1.1

44.7

Major BPS

63.8

0.34

1.2

54.7

43.1

Major PPT

67.3

0.39

39.6

Minor 5ss

24.2

-3

3.2

29.7

43.3

Minor BPS

45.7

-0.2

2.3

62.14

47.5

Associated Gene:

Gene:

HCRT

Ensembl Gene ID:

ENSAPLG00000023017

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025260

3220153 - 3221108

956