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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3243408_3243519_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3243408 - 3243519
Intron Length:
112

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
TTGCTTCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCATAAC
U12 Branch Point Sequence:
CCCCCCATAACC
Flanking Amino Acid:
GAEANAGGQFESLTFDMELT
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
60
46.2
Major BPS
53
0.08
1.1
55.6
36
Major PPT
77.5
0.62
0.8
69.8
36.6
Minor 5ss
36.5
-1.5
3.2
48.4
47.2
Minor BPS
54.4
0.12
1.7
60.7
44.5

Associated Gene:

Gene:
STAT3
Ensembl Gene ID:
ENSAPLG00000007739
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008159
3241615 - 3252705
11091