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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3245421_3245632_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3245421 - 3245632
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAACCCCC
5'SS Class:
major
3'SS Sequence:
TCTTCTCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
GCACCCAAAAAT
Flanking Amino Acid:
QLTTLAEKLLGPGVNYSGCQ
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.7
0.37
1.2
53.3
44
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
78.7
0.65
0.9
73.1
37.3
Minor 5ss
44.8
-0.6
2.9
57.8
40.9
Minor BPS
43.8
-0.3
2
57.74
44

Associated Gene:

Gene:
STAT3
Ensembl Gene ID:
ENSAPLG00000007739
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008159
3241615 - 3252705
11091