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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3245769_3245963_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3245769 - 3245963
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGCTC
5'SS Class:
major
3'SS Sequence:
TTTCCTCCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTCAG
U12 Branch Point Sequence:
TCCTGCTCAGGG
Flanking Amino Acid:
WYNMLTNNPKNVNFFTKPPI
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
68.9
38.9
Major BPS
55.8
0.14
1.6
65.3
43.7
Major PPT
86.6
0.82
0.7
81.4
23.5
Minor 5ss
33.9
-1.8
3.7
49.6
47
Minor BPS
39
-0.9
2.3
42.75
48.4

Associated Gene:

Gene:
STAT3
Ensembl Gene ID:
ENSAPLG00000007739
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008159
3241615 - 3252705
11091