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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3247376_3247974_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3247376 - 3247974
Intron Length:
599

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTGGTCGC
5'SS Class:
major
3'SS Sequence:
GCTCGCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAC
U12 Branch Point Sequence:
TGGTGCTCACAC
Flanking Amino Acid:
KTGVQFTTKVRLLVKFPELN
Intron Amino Acid Position:
521

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.8
0.49
1.2
59.2
45.8
Major BPS
69.8
0.49
1.1
71.3
36.7
Major PPT
68.6
0.42
0.9
61.3
35
Minor 5ss
29.5
-2.3
2.9
36.4
40.5
Minor BPS
42
-0.6
2.2
52.52
44.5

Associated Gene:

Gene:
STAT3
Ensembl Gene ID:
ENSAPLG00000007739
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008159
3241615 - 3252705
11091