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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3249973_3250268_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3249973 - 3250268
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GTCCCCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CCCTTTCTAACA
Flanking Amino Acid:
LLQTAATAAQQGGQATHPTA
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.9
73.9
36.8
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
71.5
0.48
0.8
65.1
30.5
Minor 5ss
29.6
-2.3
3.5
41.1
45.6
Minor BPS
50.6
0.01
1.7
58.44
42.1

Associated Gene:

Gene:
STAT3
Ensembl Gene ID:
ENSAPLG00000007739
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008159
3241615 - 3252705
11091