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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3280898_3282728_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

5UTR

Intron Coordinates:

3280898 - 3282728

Intron Length:

1831

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTGAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCCTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGCTGAG

U12 Branch Point Sequence:

TCGGGTTTAGTT

Flanking Amino Acid:

5UTR

Intron Amino Acid Position:

5UTR

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

0.9

77.2

32.9

Major BPS

47.4

-0.1

1.5

42.8

41.8

Major PPT

83.2

0.75

0.7

77.4

24.6

Minor 5ss

30.2

-2.3

41.3

44.8

Minor BPS

44.7

-0.3

58.43

45.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021375

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045785

3271527 - 3283797

12271

ENSAPLT00000033686

3277373 - 3283797

6425