About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3289048_3289242_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3289048 - 3289242
Intron Length:
195

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TCTGTTTTGGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGGAAAT
U12 Branch Point Sequence:
TATCGCTGAGGA
Flanking Amino Acid:
GELGKVQFRDLNPDVNVFQR
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.3
72.2
39.5
Major BPS
47.3
-0.1
1.3
50.8
41.5
Major PPT
78.8
0.65
1
76.3
37.7
Minor 5ss
32
-2.1
2.7
36
33.5
Minor BPS
41.6
-0.6
2.2
55.14
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026337
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045976
3288798 - 3290105
1308