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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3339326_3339916_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3339326 - 3339916
Intron Length:
591

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGGGCA
5'SS Class:
major
3'SS Sequence:
CCCCCCCTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGTTTAT
U12 Branch Point Sequence:
ACACGTTTATGT
Flanking Amino Acid:
AKRLIKEYQQKEIEFLKKET
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.8
0.58
1
65.6
33.8
Major BPS
69
0.47
1.2
61.1
45.5
Major PPT
65.4
0.35
0.9
60.5
29.4
Minor 5ss
25.8
-2.8
3.3
29.9
37
Minor BPS
40.5
-0.6
2.1
51.9
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026477
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017262
3338413 - 3345377
6965