About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3340703_3340834_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3340703 - 3340834
Intron Length:
132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGAA
5'SS Class:
strong_major
3'SS Sequence:
GTGCCCACCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
CCGTGCCAACCT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.4
30.8
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
62.9
0.29
0.9
55.3
35
Minor 5ss
23.1
-3.1
3.2
28
44
Minor BPS
36.9
-0.9
2.3
51.3
49

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026477
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017262
3338413 - 3345377
6965