Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3348558_3348963_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3348558 - 3348963

Intron Length:

406

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGGGTC

5'SS Class:

major

3'SS Sequence:

CCCCCCCCGACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCCCAT

U12 Branch Point Sequence:

GTGTCCCCATGT

Flanking Amino Acid:

SSTRPRMMMMPPPSPSMPTS

Intron Amino Acid Position:

258

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.5

0.67

0.9

69.1

35.6

Major BPS

59.7

0.24

1.3

68.6

38.9

Major PPT

62.3

0.28

0.9

56.5

27.4

Minor 5ss

28.5

-2.5

3.6

37.5

41.8

Minor BPS

41.9

-0.5

2.2

61.78

47.4

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000024048

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025330

3347351 - 3350713

3363