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Intron Name: Anas_platyrhynchos_platyrhynchos_28_3356697_3356745_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

3356697 - 3356745

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTGACGGTG

5'SS Class:

major

3'SS Sequence:

GGAGCAGAGCGAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

CATGGAT

U12 Branch Point Sequence:

TGCCCCACATCC

Flanking Amino Acid:

GPPGPPVSTTGCQRAPFPLS

Intron Amino Acid Position:

170

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

62.2

0.29

1.2

54.8

44.4

Major BPS

51.3

0.03

1.4

52.7

43.2

Major PPT

37.2

-0.7

1.6

36.1

Minor 5ss

32.5

-2

3.6

37.5

47.3

Minor BPS

43.3

-0.5

54.27

Associated Gene:

Gene:

COL1A1

Ensembl Gene ID:

ENSAPLG00000024223

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025182

3354613 - 3358407

3795