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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3403837_3404093_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3403837 - 3404093
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
TGGTGCTGAAAT
Flanking Amino Acid:
VMQLLLENLGNENVHRSVKP
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
81.3
32.8
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
73.1
0.52
1
63
43
Minor 5ss
32.7
-2
3.4
40.8
45.4
Minor BPS
50.3
0.09
2
71.17
45

Associated Gene:

Gene:
KPNB1
Ensembl Gene ID:
ENSAPLG00000010177
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010681
3400661 - 3421473
20813