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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3404202_3404817_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3404202 - 3404817
Intron Length:
616

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGTCAA
5'SS Class:
strong_major
3'SS Sequence:
GTTCTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAC
U12 Branch Point Sequence:
GGGTGTTTGACT
Flanking Amino Acid:
IGLKNYAEYQVCLAAVGLVG
Intron Amino Acid Position:
697

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
70.2
37.7
Major BPS
68.7
0.47
1.2
63.1
44.5
Major PPT
83.4
0.75
0.8
77.4
35.8
Minor 5ss
26.7
-2.7
2.9
31.1
43
Minor BPS
53.3
0.18
1.8
68.14
43.1

Associated Gene:

Gene:
KPNB1
Ensembl Gene ID:
ENSAPLG00000010177
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010681
3400661 - 3421473
20813