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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3404901_3405977_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3404901 - 3405977
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCGGTGCT
5'SS Class:
major
3'SS Sequence:
TTTCCATGCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TTTTTTCTAACA
Flanking Amino Acid:
ALMAVSTLVEVLGGEFLKYM
Intron Amino Acid Position:
669

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.3
71.9
36.2
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
73.9
0.54
0.9
68.8
36.2
Minor 5ss
29.3
-2.4
3.3
41.8
44.9
Minor BPS
70.7
0.64
1.6
83.44
30.4

Associated Gene:

Gene:
KPNB1
Ensembl Gene ID:
ENSAPLG00000010177
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010681
3400661 - 3421473
20813