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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3408845_3410030_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3408845 - 3410030
Intron Length:
1186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAACAATA
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTGTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
CCTTCTGTTACA
Flanking Amino Acid:
IVQKLLETTDRPDGHQNNLR
Intron Amino Acid Position:
547

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1.1
80.8
33.7
Major BPS
66.1
0.4
1
73
31.5
Major PPT
81.3
0.7
0.8
75.1
33.3
Minor 5ss
42.6
-0.8
3
57.9
46.3
Minor BPS
47.7
-0.1
2.3
62.29
44.3

Associated Gene:

Gene:
KPNB1
Ensembl Gene ID:
ENSAPLG00000010177
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010681
3400661 - 3421473
20813