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© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3410162_3411389_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3410162 - 3411389
Intron Length:
1228

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
TTCTGTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTAAA
U12 Branch Point Sequence:
ACTCACTTAAAA
Flanking Amino Acid:
EPRVASNVCWAFTSLAEAAY
Intron Amino Acid Position:
504

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
60.5
45.8
Major BPS
69
0.47
1
69.9
32.6
Major PPT
82.7
0.74
0.9
80.2
37.3
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
57.8
0.24
1.6
66.02
39.6

Associated Gene:

Gene:
KPNB1
Ensembl Gene ID:
ENSAPLG00000010177
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010681
3400661 - 3421473
20813