About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3411582_3411802_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3411582 - 3411802
Intron Length:
221

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
ATCTGTGTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
ATGATCACACCT
Flanking Amino Acid:
PNQLKPLVIQAMPTLIELMK
Intron Amino Acid Position:
440

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
75.8
0.64
1
65.8
41
Major PPT
70.7
0.47
1
61.9
43.9
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
42.2
-0.5
2
60.02
43.2

Associated Gene:

Gene:
KPNB1
Ensembl Gene ID:
ENSAPLG00000010177
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010681
3400661 - 3421473
20813