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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3415299_3416375_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3415299 - 3416375
Intron Length:
1077

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGGGG
5'SS Class:
strong_major
3'SS Sequence:
ATTTCTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATTT
Flanking Amino Acid:
EFTKANFDKESERHFIMQVV
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
67.8
43.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86
0.81
0.8
78
35.8
Minor 5ss
28.6
-2.5
3.5
37.8
47.1
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
KPNB1
Ensembl Gene ID:
ENSAPLG00000010177
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010681
3400661 - 3421473
20813