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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3430836_3430937_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3430836 - 3430937
Intron Length:
102

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
CCTTGCTTATTT
Flanking Amino Acid:
GGFLISRLIKLTVDGFANDK
Intron Amino Acid Position:
777

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
94.3
1
0.5
93.3
15.5
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
52.5
0.16
2.1
70.91
46.7

Associated Gene:

Gene:
NPEPPS
Ensembl Gene ID:
ENSAPLG00000009750
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010231
3428546 - 3455440
26895