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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3432736_3433328_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3432736 - 3433328
Intron Length:
593

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGAAAA
5'SS Class:
major
3'SS Sequence:
TGCTATTCATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGTCTCCAAAT
Flanking Amino Acid:
RLGWDPKPGEGHLDALLRGL
Intron Amino Acid Position:
622

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
67.8
39.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
67.9
0.4
0.9
67.2
38.8
Minor 5ss
31
-2.2
3.1
31.2
42.7
Minor BPS
49.7
0.06
2
74.35
42.2

Associated Gene:

Gene:
NPEPPS
Ensembl Gene ID:
ENSAPLG00000009750
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010231
3428546 - 3455440
26895