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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3433549_3434932_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3433549 - 3434932
Intron Length:
1384

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTAAC
U12 Branch Point Sequence:
GTAAAACTAACC
Flanking Amino Acid:
LGLQNDLFSLARAGIISTVE
Intron Amino Acid Position:
549

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
74.1
36.5
Major BPS
68
0.45
0.9
67.6
25.3
Major PPT
84.3
0.77
0.7
77
31.7
Minor 5ss
39.8
-1.1
2.9
48.9
41.6
Minor BPS
44
-0.4
2
56.77
40.2

Associated Gene:

Gene:
NPEPPS
Ensembl Gene ID:
ENSAPLG00000009750
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010231
3428546 - 3455440
26895