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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3437215_3437858_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3437215 - 3437858
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
ATTTTATTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTATTATTATTT
Flanking Amino Acid:
FPLIYVEAEQQEEDKVLKLV
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
84.2
0.77
0.8
82.6
33.5
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
56.7
0.29
1.8
77.56
39

Associated Gene:

Gene:
NPEPPS
Ensembl Gene ID:
ENSAPLG00000009750
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010231
3428546 - 3455440
26895