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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3438832_3439207_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3438832 - 3439207
Intron Length:
376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAAAGA
5'SS Class:
strong_major
3'SS Sequence:
TGTGTGTTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
GTGCCATTACCT
Flanking Amino Acid:
RMLHDYIGDEDFRKGMNLYL
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
74.1
36.4
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
74.2
0.54
1
65.1
45.5
Minor 5ss
32.2
-2
3
40.7
45.1
Minor BPS
51.7
0.13
1.9
71.67
44.6

Associated Gene:

Gene:
NPEPPS
Ensembl Gene ID:
ENSAPLG00000009750
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010231
3428546 - 3455440
26895