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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3439872_3442116_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3439872 - 3442116
Intron Length:
2245

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACCTAAC
5'SS Class:
major
3'SS Sequence:
CTCATCTTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTATTTTATT
Flanking Amino Acid:
HQWFGNLVTMEWWTHLWLNE
Intron Amino Acid Position:
289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.2
0.38
1.2
65.2
40.8
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
77
0.61
0.8
69.1
36.9
Minor 5ss
40.6
-1
2.9
50.8
40.9
Minor BPS
63.1
0.49
1.8
84.66
35.8

Associated Gene:

Gene:
NPEPPS
Ensembl Gene ID:
ENSAPLG00000009750
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010231
3428546 - 3455440
26895