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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3443675_3443779_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3443675 - 3443779
Intron Length:
105

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAAGTAA
5'SS Class:
major
3'SS Sequence:
TTATTTTATAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTGTATTTATTT
Flanking Amino Acid:
DLIAIADFAAGAMENWGLVT
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1
67
34.3
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
73.3
0.52
1.1
75.5
37.6
Minor 5ss
35.5
-1.6
3.4
43
46.5
Minor BPS
57.6
0.32
1.8
76.35
41

Associated Gene:

Gene:
NPEPPS
Ensembl Gene ID:
ENSAPLG00000009750
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010231
3428546 - 3455440
26895