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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3446577_3447895_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3446577 - 3447895
Intron Length:
1319

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGGT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTGTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAC
U12 Branch Point Sequence:
GTGCAAATAACA
Flanking Amino Acid:
TLSFPSTLQKGTGTLKIDFV
Intron Amino Acid Position:
63

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.8
0.96
0.8
78.9
35.3
Major BPS
61.3
0.28
1
62
30.6
Major PPT
83.5
0.75
0.9
80.8
36.8
Minor 5ss
32.2
-2
3.5
47.6
47.9
Minor BPS
44.7
-0.4
2
57.57
40.7

Associated Gene:

Gene:
NPEPPS
Ensembl Gene ID:
ENSAPLG00000009750
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010231
3428546 - 3455440
26895