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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3447974_3454417_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3447974 - 3454417
Intron Length:
6444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TCATTTCAAACC
Flanking Amino Acid:
TASYAPEGDEEVHATGFNYQ
Intron Amino Acid Position:
37

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
39.9
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
85.8
0.81
0.8
84.1
30.9
Minor 5ss
40.2
-1.1
3.4
55.2
49
Minor BPS
47
-0.2
1.9
58.78
40.6

Associated Gene:

Gene:
NPEPPS
Ensembl Gene ID:
ENSAPLG00000009750
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010231
3428546 - 3455440
26895