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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3467878_3468551_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3467878 - 3468551
Intron Length:
674

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGCCA
5'SS Class:
major
3'SS Sequence:
CTTGCTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAT
U12 Branch Point Sequence:
TTGTGCTGATTT
Flanking Amino Acid:
WAPPKDPIIKTVMIPGPALD
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
65.1
40.5
Major BPS
76.2
0.65
1.1
65.3
43.7
Major PPT
78.7
0.65
0.9
72.5
37.6
Minor 5ss
31.1
-2.2
3.2
40.1
45.4
Minor BPS
48.8
-0
2.1
72.44
44.9

Associated Gene:

Gene:
MRPL45
Ensembl Gene ID:
ENSAPLG00000009686
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010101
3465026 - 3468989
3964