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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3494849_3495290_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3494849 - 3495290
Intron Length:
442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
CTCTGTCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAG
U12 Branch Point Sequence:
GGGCGCTCAGCC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
60.6
38.8
Major BPS
47.4
-0.1
1.6
54.7
43.1
Major PPT
74.8
0.56
0.8
68.9
31.6
Minor 5ss
32.6
-2
3.3
43.1
44.2
Minor BPS
40.7
-0.7
2
46.03
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017121
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046743
3491456 - 3496300
4845