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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3500502_3500901_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3500502 - 3500901
Intron Length:
400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACGTCC
5'SS Class:
major
3'SS Sequence:
CTCGCTTCTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
GTCTGCTGACGT
Flanking Amino Acid:
FAASLRELEKCGWYWGPMNW
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
67.5
39
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
77.7
0.62
0.8
68.8
37.2
Minor 5ss
43.5
-0.7
3.1
60
44.7
Minor BPS
42.4
-0.5
2.3
60.99
48.3

Associated Gene:

Gene:
SOCS7
Ensembl Gene ID:
ENSAPLG00000027219
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045763
3495024 - 3501333
6310