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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3507150_3508454_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
3507150 - 3508454
Intron Length:
1305

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTCCC
5'SS Class:
strong_major
3'SS Sequence:
CCGGGGGTGGGAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GAGGCAG
U12 Branch Point Sequence:
GGGTCCTGCCCG
Flanking Amino Acid:
YSQVIALIQNSGVCGRGAPL
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
74.9
35.3
Major BPS
34.4
-0.9
1.6
34.8
43.8
Major PPT
40.8
-0.5
1.7
33.5
40.7
Minor 5ss
30
-2.3
2.7
36.3
40.6
Minor BPS
34.6
-1.3
3.5
45.67
46.2

Associated Gene:

Gene:
ARHGAP23
Ensembl Gene ID:
ENSAPLG00000030055
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025304
3505569 - 3517927
12359