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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3511071_3511153_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3511071 - 3511153
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGCGGG
5'SS Class:
major
3'SS Sequence:
CTTCTCCCCGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
GCAGCTCTGACG
Flanking Amino Acid:
YKQILTKKGKKVGGGIRQWK
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.1
58.2
46.8
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
78.8
0.65
0.7
73.4
24.8
Minor 5ss
34.7
-1.7
3.5
46.9
48.5
Minor BPS
44.6
-0.5
1.8
44.29
41.9

Associated Gene:

Gene:
ARHGAP23
Ensembl Gene ID:
ENSAPLG00000030055
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025304
3505569 - 3517927
12359