About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3513840_3514196_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3513840 - 3514196
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGCT
5'SS Class:
strong_major
3'SS Sequence:
TCTGTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAG
U12 Branch Point Sequence:
TCCCGCTGAGCA
Flanking Amino Acid:
GATEINLQDERWQDLNVISS
Intron Amino Acid Position:
915

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
75.6
33.8
Major BPS
46
-0.2
1.6
40.4
42.3
Major PPT
75.7
0.58
0.8
69.7
31.1
Minor 5ss
26.4
-2.7
3.5
38.5
46.7
Minor BPS
43.8
-0.4
2
53.45
44.7

Associated Gene:

Gene:
ARHGAP23
Ensembl Gene ID:
ENSAPLG00000030055
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025304
3505569 - 3517927
12359