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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3525689_3527861_R

Intron Information:

Intron Rank:
19
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3525689 - 3527861
Intron Length:
2173

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCTAT
5'SS Class:
weak_major
3'SS Sequence:
CCTTCCCATCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
CCCTTCCCATCC
Flanking Amino Acid:
EYMRIQGQQQ*
Intron Amino Acid Position:
1578

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
65.8
42.7
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
74.8
0.56
0.9
66.1
34.9
Minor 5ss
49.7
-0
3
72.7
44.5
Minor BPS
40.7
-0.7
2
46.11
43.1

Associated Gene:

Gene:
SRCIN1
Ensembl Gene ID:
ENSAPLG00000026819
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030174
3523646 - 3574292
50647
ENSAPLT00000021574
3523646 - 3595442
71797
ENSAPLT00000021323
3523646 - 3595442
71797
ENSAPLT00000047926
3523646 - 3574318
50673