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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_28_3527546_3527861_R

Intron Information:

Intron Rank:
17
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
3527546 - 3527861
Intron Length:
316

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCCTAT
5'SS Class:
weak_major
3'SS Sequence:
AAGCTGTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTGAG
U12 Branch Point Sequence:
CTGTGCGGAGCT
Flanking Amino Acid:
EYMRIQGQQQGW*
Intron Amino Acid Position:
1581

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.8
0.42
1.2
65.8
42.7
Major BPS
47.4
-0.1
1.5
42.8
41.8
Major PPT
63.2
0.3
1
58.5
42.2
Minor 5ss
49.7
-0
3
72.7
44.5
Minor BPS
39.6
-0.7
2.5
60.2
49

Associated Gene:

Gene:
SRCIN1
Ensembl Gene ID:
ENSAPLG00000026819
Chromosome:
28

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022275
3526825 - 3540839
14015